Group name: Molecular Cell Physiology and Mathematical
Biochemistry
Other staff members
involved: Barbara Bakker
(yeast, trypanosomes), Fred Boogerd
(emergence), Klaas Krab (diabetes, modular kinetic analyses), Wilfred
Roling (microbial ecology), Jacky L. Snoep (als US, South Africa; Silicon
cell), Rob van Spanning (Paracoccus, gene networks and rgeulation), Henk van
Verseveld (microbial ecology)
Location: Centre for Research on BioComplex Systems,
BCA, Free University and Swammerdam Institute for Life Sciences, BCA,
University of Amsterdam
Web page: http://www.bio.vu.nl/html/cell_phy.html
and <http://www.bio.vu.nl/hwconf>
E-Mail: hw@bio.vu.nl
Phone: +31 20 4447230 (+31 20 4447229 fax)
Relevant research
interests:
-
System Biology:
How through multiple interactions macromolecules generate the functional
behavior of living cells
-
Entering the
living cell, i.e. perform quantitative experiments to determine the behavior of
macromolecules in living cells
-
Principles of
control, regulation and non equilibrium thermodynamics and statistical
mechanics
-
Silicon cell,
i.e. computer replica of parts of living cells
-
Network-based
drug design
-
Ecological
control analysis, i.e. 3exmaine whether control and regulation properties of
intracellular pathways also operate in ecosystems
-
Integrative and
vertical genomics: How genome, transcriptome, proteome, metabolome and physiome
together and not individually lead to functioning genomics.
-
Integrative
bioinformatics
-
Tumor system
biology
Current system
biology activities:
Cellular Bioinformatics, (including Theoretical Biochemistry, Computational biochemistry, and Mathematical Biochemistry, Mathematical Cell Biology, and Quantitative Biochemistry)
Relevant collaborations (e.g.):
-
National:
·
Peletier,
Blom, van Schuppen (CWI)
·
Kaandorp (UvA)
·
Hellingwerf, Brul
(UvA)
·
Jeneson (Utrecht)
·
Nicolay
(Eindhoven)
·
Teusink
(Wageningen)
-
International:
·
Heinrich (Berlin)
·
Snoep
(Stellenbosch)
·
Kholodenko
(Philadelphia)
Representative
publications (possibly links to pdf files):
http://www.bio.vu.nl/hwconf/papers